Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015886200.1_cds_XP_016440307.1_35776
CDS Infomation

[gene=LOC107766094] [db_xref=GeneID:107766094] [protein=spastin-like] [protein_id=XP_016440307.1] [location=complement(join(3947..4063,4778..4875,4999..5034,6257..6347,6974..7023,8571..8694,10034..10114,10204..10319,10398..10493,10578..10854,11805..11824,11933..12024,13866..14173))] [gbkey=CDS]
Sequence

ATGAGTTTTCTCAAAGATCTGGCTGAAACCCTAAGCTCGATCTTTTCCGACACTCCATCA
TCGTCTTCGCCTCAGAACGATCGTAACCTAAACTCCGCCGATCGGACGATGGACGGCGTT
GCCACCGGCAACGAACGGGCGGCGTATAAGCTGAAAGGCTACTTTGATTTGGCCAAAGAA
GAGATCGACAAAGCCGTTAGGGCTGAAGAATGGGGATTGGCTGATGATGCAATTTCCCAT
TACCAAAATGCTCAGAAAATACTCGCCGAAGGAATTTCTACTCCGGTTCCTTCGTATATT
ACTTCTAGTGAACAAGAGAAAGTGAAATCATATCGTCAAAAGCTAACAAAATGGAAGTCT
CAAGTTTCAGAGAGACTTCAGACTCTAAGTCGACGGGCAGGTGGCACATCTGCAGTCAAG
ATTTCAGCACCTCAAACCCAAAGGCTGGCTGTTTCACAATCAAGTTCATCTGCTCGAAAA
GGAGAATCTCGAACTGCGCCTAGTTCTGGGAGAGGCAGCTCTGTTATGAGGGTTCCTAAT
TCCGGAAAAGACAGCTCTGTTGCGAGGGTTCCTATTAATAGCATATCAAGCCACAAACCT
TCACAGGAATCTGCTAATGGGTATGATCCAAAGTTGGTTGACATGATAAATTCTGTAATT
GTGGATAGAAGCCCTTCTGTTAAATGGGAAGATATTGCTGGACTTGAAAAGGCAAAGCAA
GCTCTCTTAGAGATGGTAATTCTACCAACCAAAAGAAAGGACCTCTTCACTGGCTTAAGA
AGGCCTGCTAGAGGTCTACTTCTTTTTGGACCACCGGGTACTGGAAAAACCATGCTTGCC
AAAGCAGTAGCTTCAGAGTCGGAGGCAACATTTTTCAATGTGTCTGCTTCTTCGCTAACA
TCAAAGTGGGTTGGAGAGGGTGAAAAGCTTGTCAAGACACTTTTCATGGTTGCCATTTCC
AGGAAGCCATCTGTAATTTTCATGGATGAGATAGATAGCGTTATGTCAACTAGAACTACC
AATGAGAATGAAGCAAGCAGAAGGCTGAAATCAGAGTTTCTAGTTCAGTTTGATGGGGTG
ACATCAAATTCTGATGACCTGGTAATTGTAATTGGTGCAACGAATAAGCCACAGGAGTTG
GATGATGCTGTTCTAAGGAGATTGGTCAAAAGAATATATATTCCTTTACCTGATGCTAAT
GTTAGAAGACAACTTCTGAAACACAGACTAAAGGGAAAAGCATTTTCCTTGCCTGGTGGA
GATCTAGATCGACTAGTGAGAGACACAGAAGGGTATTCTGGAAGTGATCTTCAAGCCTTG
TGCGAGGAGGCCGCAATGATGCCAATCAGAGAGCTTGGTGCTAACATTCTCAGAGTCGAT
GCAGATCAGGTAAGGGGTTTAAGATATGGAGATTTCCAAAAGGCCATGACAGTGATTAGG
CCTAGTCTGCAAAAGAGCAAGTGGGAGGAACTTGAACGGTGGAACCAAGAGTTTGGTGCA
AACTAA

Peptide Sequence

PEP ID

XP_016440307.1
PEP Infomation

PREDICTED: spastin-like [Nicotiana tabacum]
Sequence

MSFLKDLAETLSSIFSDTPSSSSPQNDRNLNSADRTMDGVATGNERAAYKLKGYFDLAKE
EIDKAVRAEEWGLADDAISHYQNAQKILAEGISTPVPSYITSSEQEKVKSYRQKLTKWKS
QVSERLQTLSRRAGGTSAVKISAPQTQRLAVSQSSSSARKGESRTAPSSGRGSSVMRVPN
SGKDSSVARVPINSISSHKPSQESANGYDPKLVDMINSVIVDRSPSVKWEDIAGLEKAKQ
ALLEMVILPTKRKDLFTGLRRPARGLLLFGPPGTGKTMLAKAVASESEATFFNVSASSLT
SKWVGEGEKLVKTLFMVAISRKPSVIFMDEIDSVMSTRTTNENEASRRLKSEFLVQFDGV
TSNSDDLVIVIGATNKPQELDDAVLRRLVKRIYIPLPDANVRRQLLKHRLKGKAFSLPGG
DLDRLVRDTEGYSGSDLQALCEEAAMMPIRELGANILRVDADQVRGLRYGDFQKAMTVIR
PSLQKSKWEELERWNQEFGAN

Transcript Sequence

Gene sequence data has not been registered.